PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC11277_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 486aa    MW: 52649.3 Da    PI: 7.453
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC11277_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.41.1e-12314359454
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  +h e+Er+RR+++N++f  Lr ++P+       K++Ka+ L  A+ YI++L
  RrC11277_p1 314 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAIAYINEL 359
                  799***********************6.....5***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.3E-3712138IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.111310359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.16E-17313380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.17E-14313363No hitNo description
Gene3DG3DSA:4.10.280.101.9E-18314380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-10314359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-16316365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
GKTKQRSSPP PFSTPADQEY RKKVLRELNS LISGGAGPSD DAVDEEVTDT EWFFLVSMTQ  60
SFACGAGLAG RAFSTANPVW VSGSDQLSGS GCERAKQGGV FGMQTIACIP SANGVVELGS  120
TVKIRQSSDL VNKVRMLFNL DGGAGLNWNL DPDQGENDPS MWINDPIEAP EPDNGAPSSS  180
SQPFSKPIQF EIGGNSSTVT ENPNPIPNFN NKNSRELNFS TSSTTLVKKP KAGEILSFGD  240
EGKRCSINLD PTSYSGQTQK IKKSLGLTDD KVLSFGGGES DHSDLEASVV KEIPEKRPKK  300
RGRKPANGRE EPLNHVEAER QRREKLNQRF YALRAVVPNV SKMDKASLLG DAIAYINELK  360
SKVTKTESEK AQIKNQLEEV KSELAGRKAS AGGDLSTSSS VTAIKPVGME IEVKIIGWDG  420
MIRVESSKRN HPAARLMSAL MDLELEVNHA SMSVVNDLMI QQATVKMGFR IYTQEQLRAS  480
LISKIG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yz6_A4e-501314167195Transcription factor MYC3
4rs9_A4e-501314167195Transcription factor MYC3
4rqw_B4e-501314167195Transcription factor MYC3
4rqw_A4e-501314167195Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1295303KRPKKRGRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013735805.10.0PREDICTED: transcription factor MYC2
SwissprotQ392040.0MYC2_ARATH; Transcription factor MYC2
TrEMBLM4D1290.0M4D129_BRARP; Uncharacterized protein
STRINGBra010178.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12652896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.10.0bHLH family protein